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Progress — Keener 2009 Vol II 重读

Execution Mode

  • Mode: (a) main agent serial, "一口气 10 章不急" cadence
  • Decided by: user 2026-06-05 "1. A 丢弃 11-20 重读; 2. 全本 II; 3. 在新文件夹写本书笔记 + book_summary (两本独立书); 4. 主 agent 亲自做"
  • Folder: 2009-Mathematical-Physiology-II-Keener/ (新, 与 Vol I 完全独立)
  • Chapter numbering: 11..20 (book-internal numbering, 保持原书标号, 不用重排为 1..10)
  • 用户明确说"两本独立的书" → Vol II 内部章节保持 11-20 编号, 与 Vol I 笔记 (Chapter-01..10.md) 互不干扰
  • Strategy: SOP instruction.md 全流程 (Phase 0-3 + Phase 8)

Phase 0

  • [x] 0.5 检查旧版 Ch11-20 → 存在, 是 2026-05-11 subagent 派发的 9 节式旧版, 不符合新 SOP
  • [x] 0.6 决策: 丢弃旧版, 写入新文件夹 2009-Mathematical-Physiology-II-Keener/
  • [x] 0.7 PDF metadata:
  • 路径: /home/jason/Documents/Books/Mathematical Physiology_ II_ Sy - James Keener.pdf (14M, 601 pages)
  • 标题: Mathematical Physiology II: Systems Physiology (第二版, Springer IAM Vol 8/II, 2009)
  • 作者: James Keener, James Sneyd
  • Producer: Acrobat Distiller 8.0.0 (Springer 出版)
  • 注意: 用户消息中路径 typo __II_ 多余下划线, 实际是单下划线 _II_
  • 独立性: 这本 Vol II (601 pages) 与 Vol I PDF (1067 pages = I+II 合订) 是不同文件; 这本只含 Vol II 内容

Phase 1 — Structural Survey

  • [x] 1.1 detect: TEXT, 601 pages, 1.8M chars
  • [x] 1.2 extract text → /tmp/keener_vol2_full.txt (28894 lines)
  • [x] 1.3 detect_chapters_vol2.py: letter-spaced C H A P T E R N regex, 找到 10 个 chapter start
  • [x] 1.4 extract_chapters_vol2.py: 切出 ch_src/ch_11..20.txt, 修正 Ch20 end 边界 (原误切到 References 起点 p.527, 实际 p.525 是 Ch20 末, p.526-527 是 Appendix)
  • [x] 1.5 verify each split (head -3 / tail -3) — all 10 pass

Chapter page map (PDF page, 1-indexed)

Ch Title Start End Pages Chars Lines Notes
11 The Circulatory System 25 76 52 105,223 2860 < 100KB after extract... wait 105K
12 The Heart 77 180 104 231,794 5892 > 200KB → multi-read
13 Blood 181 235 55 116,624 2906 > 100KB → split read
14 Respiration 236 269 34 63,926 1831 < 100KB direct
15 Muscle 270 325 56 112,378 3072 > 100KB → split read
16 The Endocrine System 326 372 47 92,945 2510 < 100KB
17 Renal Physiology 373 402 30 60,306 1526 < 100KB
18 The Gastrointestinal System 403 443 41 86,546 2027 < 100KB
19 The Retina and Vision 444 493 50 107,728 2649 > 100KB → split read
20 The Inner Ear 494 525 32 61,665 1724 < 100KB (after fix)

Vol II Appendix (Units & Physical Constants) on p.526-527 — NOT in any chapter, will not be synced. Vol II References on p.528-571 — NOT in any chapter, will not be synced. Vol II Index on p.572-601 — NOT in any chapter, will not be synced.

Phase 2 — Per-chapter deep read

SOP §2.2 7 sections per chapter, ≥2000 zh chars: 1. 作者 2. 内容概述 3. 核心方程与概念 4. 关键结论 5. 挑战和开放性问题 6. 个人反思与批判性分析 7. 重要参考文献 (≥5 [XN])

  • [ ] ch11 (105K) — The Circulatory System
  • [ ] ch12 (232K → multi-read 3x) — The Heart
  • [ ] ch13 (117K → split 2x) — Blood
  • [ ] ch14 (64K) — Respiration
  • [ ] ch15 (112K → split 2x) — Muscle
  • [ ] ch16 (93K) — The Endocrine System
  • [ ] ch17 (60K) — Renal Physiology
  • [ ] ch18 (87K) — The Gastrointestinal System
  • [ ] ch19 (108K → split 2x) — The Retina and Vision
  • [ ] ch20 (62K) — The Inner Ear

Phase 3 — book_summary.md

  • [ ] 写 Vol II 独立的 book_summary.md (13 节模板, 4500-7500 zh chars 目标)

Phase 8

  • [ ] README.md 更新 (在 Reading/ 仓库根, 添加 Vol II 条目)
  • [ ] git commit "Add Vol II notes (Keener 2009): 10 chapters + book summary" — 推 master
  • [ ] 同步到 reading-notes-site (cp -p + generate_pages.py + git push, 触发 CF Pages deploy)

Cleanup (Phase 8 末尾)

  • [ ] ch_src/ 删除 (transient)
  • [ ] /tmp/detect_chapters_vol2.py, /tmp/extract_chapters_vol2.py 删除
  • [ ] /tmp/keener_vol2_full.txt, /tmp/keener_vol2_page_map.json 删除
  • [ ] progress.md 删除
  • [ ] check_list_vol2.md (decision log, 留)